ABOUT THIS RECORDspecies: Pongo pygmaeus
miRNA family: mir-628
source: miRBase, original name: ppy-mir-628 (MI0015110)
SEQUENCE & STRUCTURE| miRNA TCTAGTAAGAGTGGCAGTCGA miRNA* GCTGACATATTTACTAGAGG mismatches: 3 bulges: 1 |
pre-miRNA
ATAGCTGTTGTGTCACTTCCTCATGCTGACATATTTACTAGAGGGTAAAATTAATAACCTTCTAGTAAGAGTGGCAGTCGAAGGGAAGGGCTCAT
dot-bracket secondary structure
........((.(((.((((((..(((((.(((.(((((((((((((..........))))))))))))).))).))).))..))))))))).)).
SIMILARITIES
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miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Brameier M, BMC Res Notes. 3:64(2010)., "Genome-wide comparative analysis of microRNAs in three non-human primates"
ATAGCTGTTGTGTCACTTCCTCATGCTGACATATTTACTAGAGGGTAAAATTAATAACCTTCTAGTAAGAGTGGCAGTCGAAGGGAAGGGCTCAT
dot-bracket secondary structure
........((.(((.((((((..(((((.(((.(((((((((((((..........))))))))))))).))).))).))..))))))))).)).
SIMILARITIES| miRBase cfa-mir-628: 5e-49 PMRD no hits microPC no hits | UniProt no hits RFAM mir-628: 5e-37 |
Identical with: cfa-mir-628 from miRBase (MNEST026891) |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Brameier M, BMC Res Notes. 3:64(2010)., "Genome-wide comparative analysis of microRNAs in three non-human primates"
