ABOUT THIS RECORDspecies: Pongo pygmaeus
miRNA family: mir-671
source: miRBase, original name: ppy-mir-671 (MI0015137)
SEQUENCE & STRUCTURE| miRNA AGGAAGCCCTGGAGGGGCTGGAG miRNA* CCGGTTCTCAGGGCTCCACC mismatches: 1 bulges: 3 |
pre-miRNA
GCAGGTGAACTGGCAGGCCAGGAAGAGGAGGAAGCCCTGGAGGGGCTGGAGGTGATGGATGTTTTCCTCCGGTTCTCAGGGCTCCACCTCTTTCGGGCCG
TAGAGCCAGGGCTGGTGC
dot-bracket secondary structure
(((...(..(((((.((((.((((((((.(((.((((((..(((((((((((.(((....)))..)))))))))))))))))))).)))))))).)))).
....)))))..)...)))
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Brameier M, BMC Res Notes. 3:64(2010)., "Genome-wide comparative analysis of microRNAs in three non-human primates"
GCAGGTGAACTGGCAGGCCAGGAAGAGGAGGAAGCCCTGGAGGGGCTGGAGGTGATGGATGTTTTCCTCCGGTTCTCAGGGCTCCACCTCTTTCGGGCCG
TAGAGCCAGGGCTGGTGC
dot-bracket secondary structure
(((...(..(((((.((((.((((((((.(((.((((((..(((((((((((.(((....)))..)))))))))))))))))))).)))))))).)))).
....)))))..)...)))
SIMILARITIES| miRBase mml-mir-671: 1e-62 PMRD no hits microPC no hits | UniProt sp|Q9P2E5|CHPF2_HUMAN: 0.00003 RFAM mir-671: 4e-32 |
Identical with: mml-mir-671 from miRBase (MNEST028108) |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Brameier M, BMC Res Notes. 3:64(2010)., "Genome-wide comparative analysis of microRNAs in three non-human primates"
