ABOUT THIS RECORDspecies: Pongo pygmaeus
miRNA family: mir-875
source: miRBase, original name: ppy-mir-875 (MI0015152)
SEQUENCE & STRUCTURE| miRNA CCTGGAAATACTGAGGTTGTG miRNA* ATACCTCAGTTTTATCAGGTG mismatches: 5 bulges: 0 |
pre-miRNA
TTAGTGGTACTATACCTCAGTTTTATCAGGTGTTCTTAAAATCACCTGGAAATACTGAGGTTGTGTCTCACTGAAC
dot-bracket secondary structure
((((((..((...((((((((.((.(((((((..........))))))).)).))))))))...))..))))))..
SIMILARITIES
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miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
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references
[1] Brameier M, BMC Res Notes. 3:64(2010)., "Genome-wide comparative analysis of microRNAs in three non-human primates"
TTAGTGGTACTATACCTCAGTTTTATCAGGTGTTCTTAAAATCACCTGGAAATACTGAGGTTGTGTCTCACTGAAC
dot-bracket secondary structure
((((((..((...((((((((.((.(((((((..........))))))).)).))))))))...))..))))))..
SIMILARITIES| miRBase ppy-mir-875: 8e-38 PMRD no hits microPC no hits | UniProt no hits RFAM mir-875: 3e-28 |
Identical with: ptr-mir-875 from miRBase (MNEST030606) |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Brameier M, BMC Res Notes. 3:64(2010)., "Genome-wide comparative analysis of microRNAs in three non-human primates"
