ABOUT THIS RECORDspecies: Pongo pygmaeus
miRNA family: mir-1180
source: miRBase, original name: ppy-mir-1180 (MI0015180)
SEQUENCE & STRUCTURE| miRNA TTTCCGGCTCGCGTGGGTGTGT miRNA* CCCACCCGGCCGGGAATA mismatches: 4 bulges: 1 |
pre-miRNA
GCTGCTGGACCCACCCGGCCGGGAATAGTGCTCCTGGTTGTTTCCGGCTCGCGTGGGTGTGTCGGCGGC
dot-bracket secondary structure
((((((((((((((.((((((((((((..((.....)))))))))))).)).))))))...))))))))
SIMILARITIES
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miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Brameier M, BMC Res Notes. 3:64(2010)., "Genome-wide comparative analysis of microRNAs in three non-human primates"
GCTGCTGGACCCACCCGGCCGGGAATAGTGCTCCTGGTTGTTTCCGGCTCGCGTGGGTGTGTCGGCGGC
dot-bracket secondary structure
((((((((((((((.((((((((((((..((.....)))))))))))).)).))))))...))))))))
SIMILARITIES| miRBase hsa-mir-1180: 1e-33 PMRD no hits microPC no hits | UniProt no hits RFAM mir-1180: 5e-30 |
Identical with: hsa-mir-1180 from miRBase (MNEST029049) |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Brameier M, BMC Res Notes. 3:64(2010)., "Genome-wide comparative analysis of microRNAs in three non-human primates"
