ABOUT THIS RECORDspecies: Pongo pygmaeus
miRNA family: mir-379
source: miRBase, original name: ppy-mir-1197 (MI0015185)
SEQUENCE & STRUCTURE| miRNA TAGGACACATGGTCTACTTCT miRNA* ATGCGGTTGACCATGGTGTGTACG mismatches: 5 bulges: 3 |
pre-miRNA
ACTTCCTGGTATTTGAAGATGCGGTTGACCATGGTGTGTACGCTTTATTTATGACGTAGGACACATGGTCTACTTCTTCTCAATATCA
dot-bracket secondary structure
.......((((((.(((((...(((.(((((((...(.(((((.........).)))).)...))))))).))))))))..)))))).
SIMILARITIES
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miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Brameier M, BMC Res Notes. 3:64(2010)., "Genome-wide comparative analysis of microRNAs in three non-human primates"
ACTTCCTGGTATTTGAAGATGCGGTTGACCATGGTGTGTACGCTTTATTTATGACGTAGGACACATGGTCTACTTCTTCTCAATATCA
dot-bracket secondary structure
.......((((((.(((((...(((.(((((((...(.(((((.........).)))).)...))))))).))))))))..)))))).
SIMILARITIES| miRBase hsa-mir-1197: 2e-42 PMRD no hits microPC no hits | UniProt no hits RFAM mir-154: 1e-31 |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Brameier M, BMC Res Notes. 3:64(2010)., "Genome-wide comparative analysis of microRNAs in three non-human primates"
