ABOUT THIS RECORDspecies: Pongo pygmaeus
miRNA family: mir-1238
source: miRBase, original name: ppy-mir-1238 (MI0015201)
SEQUENCE & STRUCTURE| miRNA CTCCCTCATCTGTCTGCCCC miRNA* GAGCCCCAGTGTGTGTTGGGGCTGTGACGGGTGGGCAGCCAGGC mismatches: 5 bulges: 24 |
pre-miRNA
GTGAGTGGGAGCCCCAGTGTGTGTTGGGGCTGTGACGGGTGGGCAGCCAGGCCTCTGAGCCTCCCTCATCTGTCTGCCCCAG
dot-bracket secondary structure
.....((((.(((((((......)))))))...((((((((((.....((((......))))..))))))))))...)))).
SIMILARITIES
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miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: not a miRNA
additional data
download this record
references
[1] Brameier M, BMC Res Notes. 3:64(2010)., "Genome-wide comparative analysis of microRNAs in three non-human primates"
GTGAGTGGGAGCCCCAGTGTGTGTTGGGGCTGTGACGGGTGGGCAGCCAGGCCTCTGAGCCTCCCTCATCTGTCTGCCCCAG
dot-bracket secondary structure
.....((((.(((((((......)))))))...((((((((((.....((((......))))..))))))))))...)))).
SIMILARITIES| miRBase hsa-mir-1238: 2e-20 PMRD no hits microPC no hits | UniProt no hits RFAM no hits |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: not a miRNA
additional data
download this record
references
[1] Brameier M, BMC Res Notes. 3:64(2010)., "Genome-wide comparative analysis of microRNAs in three non-human primates"
