ABOUT THIS RECORDspecies: Pongo pygmaeus
miRNA family: mir-1247
source: miRBase, original name: ppy-mir-1247 (MI0015205)
SEQUENCE & STRUCTURE| miRNA ACCCGTCCCGTTCGTCCCCGGA miRNA* CGGGAACGTCGAGACTGGAGC mismatches: 6 bulges: 1 |
pre-miRNA
CCGCTTGCCTCGCCCAGCGCAGCCCCGGCCGCTGGGCGCACCCGTCCCGTTCGTCCCCGGACGTTGCTCTCTACCCCGGGAACGTCGAGACTGGAGCGCC
CGAACTGAGCCACCTTCGCGGACCCCGAGAGCGGCG
dot-bracket secondary structure
.((((.((((((.((.(((.((....(((((.(((((((.((.(((.((..(((.(((((..((........)).))))).))).)).))).)).)))))
))...)).)))..)).)))))....)))).))))))
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Brameier M, BMC Res Notes. 3:64(2010)., "Genome-wide comparative analysis of microRNAs in three non-human primates"
CCGCTTGCCTCGCCCAGCGCAGCCCCGGCCGCTGGGCGCACCCGTCCCGTTCGTCCCCGGACGTTGCTCTCTACCCCGGGAACGTCGAGACTGGAGCGCC
CGAACTGAGCCACCTTCGCGGACCCCGAGAGCGGCG
dot-bracket secondary structure
.((((.((((((.((.(((.((....(((((.(((((((.((.(((.((..(((.(((((..((........)).))))).))).)).))).)).)))))
))...)).)))..)).)))))....)))).))))))
SIMILARITIES| miRBase hsa-mir-1247: 2e-73 PMRD no hits microPC no hits | UniProt no hits RFAM no hits |
Identical with: ptr-mir-1247 from miRBase (MNEST030670) |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Brameier M, BMC Res Notes. 3:64(2010)., "Genome-wide comparative analysis of microRNAs in three non-human primates"
