ABOUT THIS RECORDspecies: Pongo pygmaeus
miRNA family: mir-1254
source: miRBase, original name: ppy-mir-1254 (MI0015212)
SEQUENCE & STRUCTURE| miRNA AGTCTGGAAGCTGGAGCCTGCAGT miRNA* TGCACTCCAGCCTAGGCAAC mismatches: 1 bulges: 4 |
pre-miRNA
GGTGGGAGGATTGCTTGAGTCTGGAAGCTGGAGCCTGCAGTGAACTATCATTGTGCCACTGCACTCCAGCCTAGGCAACAAAATGAAATCCTGTCTA
dot-bracket secondary structure
...((.((((((..(((.((((((..(((((((..(((((((.((.......))..))))))))))))))))))))..))).....)))))).))..
SIMILARITIES
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miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Brameier M, BMC Res Notes. 3:64(2010)., "Genome-wide comparative analysis of microRNAs in three non-human primates"
GGTGGGAGGATTGCTTGAGTCTGGAAGCTGGAGCCTGCAGTGAACTATCATTGTGCCACTGCACTCCAGCCTAGGCAACAAAATGAAATCCTGTCTA
dot-bracket secondary structure
...((.((((((..(((.((((((..(((((((..(((((((.((.......))..))))))))))))))))))))..))).....)))))).))..
SIMILARITIES| miRBase hsa-mir-1254: 2e-45 PMRD no hits microPC no hits | UniProt sp|Q5T7P6|TMM78_HUMAN: 0.00008 RFAM Metazoa_SRP: 0.000000006 |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Brameier M, BMC Res Notes. 3:64(2010)., "Genome-wide comparative analysis of microRNAs in three non-human primates"
