ABOUT THIS RECORDspecies: Pongo pygmaeus
miRNA family: mir-1307
source: miRBase, original name: ppy-mir-1307 (MI0015265)
SEQUENCE & STRUCTURE| miRNA ACTCGGCGTGGCGTCGGTCGTG miRNA* CGACCGGACCTCGACCGGCTCG mismatches: 5 bulges: 2 |
pre-miRNA
CATCAAGACCCAGCTGAGTCACTGTCACTGCCTACCAATCTCGACCGGACCTCGACCGGCTCGTCTGTGTTGCCAATCGACTCGGCGTGGCGTCGGTCGT
GGTAGATAGGCGGTCATGCATACGAATTTTCAGCTCTTGTTCTGGTGAC
dot-bracket secondary structure
(((((..((..(((((((((..(((.((((((((.(.(((.(((((((.((.((.(((..(((..((......))..)))..))))).))..))))))).
))).).))))))))...)))...))...)))))))...))..)))))..
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Brameier M, BMC Res Notes. 3:64(2010)., "Genome-wide comparative analysis of microRNAs in three non-human primates"
CATCAAGACCCAGCTGAGTCACTGTCACTGCCTACCAATCTCGACCGGACCTCGACCGGCTCGTCTGTGTTGCCAATCGACTCGGCGTGGCGTCGGTCGT
GGTAGATAGGCGGTCATGCATACGAATTTTCAGCTCTTGTTCTGGTGAC
dot-bracket secondary structure
(((((..((..(((((((((..(((.((((((((.(.(((.(((((((.((.((.(((..(((..((......))..)))..))))).))..))))))).
))).).))))))))...)))...))...)))))))...))..)))))..
SIMILARITIES| miRBase hsa-mir-1307: 5e-81 PMRD no hits microPC no hits | UniProt no hits RFAM mir-1307: 1e-38 |
Identical with: hsa-mir-1307 from miRBase (MNEST029174) |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Brameier M, BMC Res Notes. 3:64(2010)., "Genome-wide comparative analysis of microRNAs in three non-human primates"
