ABOUT THIS RECORDspecies: Ornithorhynchus anatinus
miRNA family: mir-1827
source: miRBase, original name: oan-let-7e (MI0006773)
SEQUENCE & STRUCTURE| miRNA TGAGGTAGTAGATTGAATAGTT miRNA* CTATACAATCTACTGTCTTTCC mismatches: 4 bulges: 0 |
pre-miRNA
GGCTCCCACCACAGTCCTGTCCTTGAGGCTGAGGTAGTAGATTGAATAGTTGTGGGGTCACGGCCTCCCTGTGTGCTAACTATACAATCTACTGTCTTTC
CTGAGGCGACAGTCAGTTCGCC
dot-bracket secondary structure
(((....((....)).((((((((.(((..(((..(((((((((.(((((((((((((....))))).......)).)))))).)))))))))..))).)
)).))).))))).......)))
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: Solexa
references
[1] Murchison EP, Kheradpour P, Sachidanandam R, Smith C, Hodges E, Xuan Z, Kellis M, Grutzner F, Stark A, Hannon GJ, Genome Res. 18:995-1004(2008)., "Conservation of small RNA pathways in platypus"
GGCTCCCACCACAGTCCTGTCCTTGAGGCTGAGGTAGTAGATTGAATAGTTGTGGGGTCACGGCCTCCCTGTGTGCTAACTATACAATCTACTGTCTTTC
CTGAGGCGACAGTCAGTTCGCC
dot-bracket secondary structure
(((....((....)).((((((((.(((..(((..(((((((((.(((((((((((((....))))).......)).)))))).)))))))))..))).)
)).))).))))).......)))
SIMILARITIES| miRBase tgu-let-7e: 5e-28 PMRD no hits microPC no hits | UniProt no hits RFAM let-7: 3e-39 |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: Solexa
references
[1] Murchison EP, Kheradpour P, Sachidanandam R, Smith C, Hodges E, Xuan Z, Kellis M, Grutzner F, Stark A, Hannon GJ, Genome Res. 18:995-1004(2008)., "Conservation of small RNA pathways in platypus"
