ABOUT THIS RECORDspecies: Ornithorhynchus anatinus
miRNA family: let-7
source: miRBase, original name: oan-let-7f-1 (MI0006962)
SEQUENCE & STRUCTURE| miRNA TGAGGTAGTAGATTGTATAGTT miRNA* CTATACAATCTATTGCCTTCCC mismatches: 2 bulges: 0 |
pre-miRNA
TTTGCTAAGGATGGATTGCTCTGGCAGAGTGAGGTAGTAGATTGTATAGTTTTTAGGGTAGTAATTTTATCCTTTTCCGGAGATAACTATACAATCTATT
GCCTTCCCTGAGGAGCAGAATTTCTACGGTGGTTTCTATCCGGGTTTGA
dot-bracket secondary structure
........(((((((.((((((..(((.(..((((((((((((((((((((...(((((((.....)))))))...........))))))))))))))))
))))..)))).)))))).(((..(....)..))))))))))........
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: Solexa
deep sequencing data evidence
references
[1] Murchison EP, Kheradpour P, Sachidanandam R, Smith C, Hodges E, Xuan Z, Kellis M, Grutzner F, Stark A, Hannon GJ, Genome Res. 18:995-1004(2008)., "Conservation of small RNA pathways in platypus"
TTTGCTAAGGATGGATTGCTCTGGCAGAGTGAGGTAGTAGATTGTATAGTTTTTAGGGTAGTAATTTTATCCTTTTCCGGAGATAACTATACAATCTATT
GCCTTCCCTGAGGAGCAGAATTTCTACGGTGGTTTCTATCCGGGTTTGA
dot-bracket secondary structure
........(((((((.((((((..(((.(..((((((((((((((((((((...(((((((.....)))))))...........))))))))))))))))
))))..)))).)))))).(((..(....)..))))))))))........
SIMILARITIES| miRBase tgu-let-7f: 2e-28 PMRD no hits microPC no hits | UniProt no hits RFAM let-7: 2e-43 |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: Solexa
deep sequencing data evidence
references
[1] Murchison EP, Kheradpour P, Sachidanandam R, Smith C, Hodges E, Xuan Z, Kellis M, Grutzner F, Stark A, Hannon GJ, Genome Res. 18:995-1004(2008)., "Conservation of small RNA pathways in platypus"
