ABOUT THIS RECORDspecies: Ornithorhynchus anatinus
miRNA family: let-7
source: miRBase, original name: oan-let-7f-2 (MI0006895)
SEQUENCE & STRUCTURE| miRNA TGAGGTAGTAGATTGTATAGTT miRNA* ATAACTATACAGTCTACTGTCTTTCC mismatches: 3 bulges: 4 |
pre-miRNA
GAATATGAAGACTTGCTGTGCTCTTTGGGATGAGGTAGTAGATTGTATAGTTTTAGGGTCATACCCGATCTTGGAGATAACTATACAGTCTACTGTCTTT
CCCACGGTGTTGCTGTTCTCGTCCGATATC
dot-bracket secondary structure
....((((..((..((...((.((.(((((.(((..((((((((((((((((((((((((......)))))))))....)))))))))))))))..))))
)))).)).)).)).))..))))........
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: Solexa
deep sequencing data evidence
references
[1] Murchison EP, Kheradpour P, Sachidanandam R, Smith C, Hodges E, Xuan Z, Kellis M, Grutzner F, Stark A, Hannon GJ, Genome Res. 18:995-1004(2008)., "Conservation of small RNA pathways in platypus"
GAATATGAAGACTTGCTGTGCTCTTTGGGATGAGGTAGTAGATTGTATAGTTTTAGGGTCATACCCGATCTTGGAGATAACTATACAGTCTACTGTCTTT
CCCACGGTGTTGCTGTTCTCGTCCGATATC
dot-bracket secondary structure
....((((..((..((...((.((.(((((.(((..((((((((((((((((((((((((......)))))))))....)))))))))))))))..))))
)))).)).)).)).))..))))........
SIMILARITIES| miRBase mml-let-7f-2: 4e-38 PMRD no hits microPC no hits | UniProt no hits RFAM let-7: 1e-32 |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: Solexa
deep sequencing data evidence
references
[1] Murchison EP, Kheradpour P, Sachidanandam R, Smith C, Hodges E, Xuan Z, Kellis M, Grutzner F, Stark A, Hannon GJ, Genome Res. 18:995-1004(2008)., "Conservation of small RNA pathways in platypus"
