ABOUT THIS RECORDspecies: Ornithorhynchus anatinus
miRNA family: mir-15
source: miRBase, original name: oan-mir-15c (MI0006691)
SEQUENCE & STRUCTURE| miRNA TAGCAGCACATCATGGTTTGT miRNA* AGACCATTCTGGGCTGCCTCA mismatches: 5 bulges: 0 |
pre-miRNA
GCCCACAGAGCAGCCTTGAGGGGGTTGTAGCAGCACATCATGGTTTGTAGGGACAAGGAGATACAGACCATTCTGGGCTGCCTCAATCCCCCAAGGAGAA
CGCGGGAGAACTGGGC
dot-bracket secondary structure
(((((....((..(((((.((((((((..(((((.((..((((((((((............))))))))))..)).)))))..)))))))))))))....
.))........)))))
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: Solexa
deep sequencing data evidence
references
[1] Murchison EP, Kheradpour P, Sachidanandam R, Smith C, Hodges E, Xuan Z, Kellis M, Grutzner F, Stark A, Hannon GJ, Genome Res. 18:995-1004(2008)., "Conservation of small RNA pathways in platypus"
GCCCACAGAGCAGCCTTGAGGGGGTTGTAGCAGCACATCATGGTTTGTAGGGACAAGGAGATACAGACCATTCTGGGCTGCCTCAATCCCCCAAGGAGAA
CGCGGGAGAACTGGGC
dot-bracket secondary structure
(((((....((..(((((.((((((((..(((((.((..((((((((((............))))))))))..)).)))))..)))))))))))))....
.))........)))))
SIMILARITIES| miRBase gga-mir-15c: 5e-28 PMRD no hits microPC no hits | UniProt no hits RFAM mir-15: 8e-27 |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: Solexa
deep sequencing data evidence
references
[1] Murchison EP, Kheradpour P, Sachidanandam R, Smith C, Hodges E, Xuan Z, Kellis M, Grutzner F, Stark A, Hannon GJ, Genome Res. 18:995-1004(2008)., "Conservation of small RNA pathways in platypus"
