ABOUT THIS RECORDspecies: Ornithorhynchus anatinus
miRNA family: mir-24
source: miRBase, original name: oan-mir-24 (MI0006757)
SEQUENCE & STRUCTURE| miRNA TGGCTCAGTTCAGCAGGAACAG miRNA* GTGCCTACTGAGCTGATATCAGT mismatches: 4 bulges: 1 |
pre-miRNA
GGACTGACCCTCCAGTGCCTACTGAGCTGATATCAGTTCTCGTTGACCCACTGGCTCAGTTCAGCAGGAACAGGAGTGCGGCCC
dot-bracket secondary structure
((.(((.(.((((.((.(((.(((((((((..(((((((.....))...))))).))))))))).))).)).)))).)))))).
SIMILARITIES
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miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: Solexa
deep sequencing data evidence
references
[1] Murchison EP, Kheradpour P, Sachidanandam R, Smith C, Hodges E, Xuan Z, Kellis M, Grutzner F, Stark A, Hannon GJ, Genome Res. 18:995-1004(2008)., "Conservation of small RNA pathways in platypus"
GGACTGACCCTCCAGTGCCTACTGAGCTGATATCAGTTCTCGTTGACCCACTGGCTCAGTTCAGCAGGAACAGGAGTGCGGCCC
dot-bracket secondary structure
((.(((.(.((((.((.(((.(((((((((..(((((((.....))...))))).))))))))).))).)).)))).)))))).
SIMILARITIES| miRBase hsa-mir-3074: 2e-20 PMRD no hits microPC no hits | UniProt no hits RFAM mir-24: 3e-19 |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: Solexa
deep sequencing data evidence
references
[1] Murchison EP, Kheradpour P, Sachidanandam R, Smith C, Hodges E, Xuan Z, Kellis M, Grutzner F, Stark A, Hannon GJ, Genome Res. 18:995-1004(2008)., "Conservation of small RNA pathways in platypus"
