ABOUT THIS RECORDspecies: Ornithorhynchus anatinus
miRNA family: mir-99
source: miRBase, original name: oan-mir-99 (MI0006897)
SEQUENCE & STRUCTURE| miRNA AACCCGTAGATCCGATCTTGT miRNA* AAGCTCGCCTCTCTGGGTCTG mismatches: 5 bulges: 0 |
pre-miRNA
GTGTGATAATGCCAGTTGGCATAAACCCGTAGATCCGATCTTGTGGTGAAGTGAAATACACAAGCTCGCCTCTCTGGGTCTGTGTCAGTGTGGTAATCGG
AC
dot-bracket secondary structure
((.((((..(((((..(((((((.(((((.(((..(((.((((((.............)))))).)))..))).))))).)))))))...))))))))).
))
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: Solexa
references
[1] Murchison EP, Kheradpour P, Sachidanandam R, Smith C, Hodges E, Xuan Z, Kellis M, Grutzner F, Stark A, Hannon GJ, Genome Res. 18:995-1004(2008)., "Conservation of small RNA pathways in platypus"
GTGTGATAATGCCAGTTGGCATAAACCCGTAGATCCGATCTTGTGGTGAAGTGAAATACACAAGCTCGCCTCTCTGGGTCTGTGTCAGTGTGGTAATCGG
AC
dot-bracket secondary structure
((.((((..(((((..(((((((.(((((.(((..(((.((((((.............)))))).)))..))).))))).)))))))...))))))))).
))
SIMILARITIES| miRBase eca-mir-99a-2: 6e-24 PMRD no hits microPC no hits | UniProt no hits RFAM mir-10: 3e-17 |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: Solexa
references
[1] Murchison EP, Kheradpour P, Sachidanandam R, Smith C, Hodges E, Xuan Z, Kellis M, Grutzner F, Stark A, Hannon GJ, Genome Res. 18:995-1004(2008)., "Conservation of small RNA pathways in platypus"
