ABOUT THIS RECORDspecies: Ornithorhynchus anatinus
miRNA family: mir-129
source: miRBase, original name: oan-mir-129 (MI0006665)
SEQUENCE & STRUCTURE| miRNA CTTTTTGCGGTCTGGGCTTGC miRNA* AAGCCCTTACCCCAAAAAGTATCTGCGAGAGACCTGGTCGGCAGATGTGGT mismatches: 5 bulges: 30 |
pre-miRNA
GGGGAGAGGTGTCTCCGTCTCCCTTGGATCTTTTTGCGGTCTGGGCTTGCTGTTCCTCTAATCAGTAGTCAGGAAGCCCTTACCCCAAAAAGTATCTGCG
AGAGACCTGGTCGGCAGATGTGGTCCCC
dot-bracket secondary structure
(((((((((.....)).))))))).(((((.(((((.(((..((((((.(((..(..((....))..).))).))))))..))).)))))..(((((((.
...(((...))).))))))).)))))..
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: Solexa
deep sequencing data evidence
references
[1] Murchison EP, Kheradpour P, Sachidanandam R, Smith C, Hodges E, Xuan Z, Kellis M, Grutzner F, Stark A, Hannon GJ, Genome Res. 18:995-1004(2008)., "Conservation of small RNA pathways in platypus"
GGGGAGAGGTGTCTCCGTCTCCCTTGGATCTTTTTGCGGTCTGGGCTTGCTGTTCCTCTAATCAGTAGTCAGGAAGCCCTTACCCCAAAAAGTATCTGCG
AGAGACCTGGTCGGCAGATGTGGTCCCC
dot-bracket secondary structure
(((((((((.....)).))))))).(((((.(((((.(((..((((((.(((..(..((....))..).))).))))))..))).)))))..(((((((.
...(((...))).))))))).)))))..
SIMILARITIES| miRBase eca-mir-129a: 5e-31 PMRD no hits microPC no hits | UniProt no hits RFAM mir-129: 1e-32 |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: Solexa
deep sequencing data evidence
references
[1] Murchison EP, Kheradpour P, Sachidanandam R, Smith C, Hodges E, Xuan Z, Kellis M, Grutzner F, Stark A, Hannon GJ, Genome Res. 18:995-1004(2008)., "Conservation of small RNA pathways in platypus"
