ABOUT THIS RECORDspecies: Ornithorhynchus anatinus
miRNA family: mir-135
source: miRBase, original name: oan-mir-135a (MI0006902)
SEQUENCE & STRUCTURE| miRNA ATGTAGGGATGGAAGCCATGA miRNA* ATGGCTTTTTATTCCTATGTGA mismatches: 0 bulges: 1 |
pre-miRNA
TGATCAAGATAAATTCACTCTAGTGTTTTATGGCTTTTTATTCCTATGTGATAGTAATAAAGTCTCATGTAGGGATGGAAGCCATGAAATACATTGTGAA
AAATCATCA
dot-bracket secondary structure
.......(((...(((((....((((((((((((((((.((((((((((((.(.(.....).).))))))))))))))))))))))))))))...)))))
..)))....
SIMILARITIES
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miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: Solexa
references
[1] Murchison EP, Kheradpour P, Sachidanandam R, Smith C, Hodges E, Xuan Z, Kellis M, Grutzner F, Stark A, Hannon GJ, Genome Res. 18:995-1004(2008)., "Conservation of small RNA pathways in platypus"
TGATCAAGATAAATTCACTCTAGTGTTTTATGGCTTTTTATTCCTATGTGATAGTAATAAAGTCTCATGTAGGGATGGAAGCCATGAAATACATTGTGAA
AAATCATCA
dot-bracket secondary structure
.......(((...(((((....((((((((((((((((.((((((((((((.(.(.....).).))))))))))))))))))))))))))))...)))))
..)))....
SIMILARITIES| miRBase gga-mir-135a-2: 6e-52 PMRD no hits microPC no hits | UniProt no hits RFAM mir-135: 1e-44 |
Identical with: tgu-mir-135a-1 from miRBase (MNEST026465) |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: Solexa
references
[1] Murchison EP, Kheradpour P, Sachidanandam R, Smith C, Hodges E, Xuan Z, Kellis M, Grutzner F, Stark A, Hannon GJ, Genome Res. 18:995-1004(2008)., "Conservation of small RNA pathways in platypus"
