ABOUT THIS RECORDspecies: Ornithorhynchus anatinus
miRNA family: mir-142
source: miRBase, original name: oan-mir-142 (MI0006772)
SEQUENCE & STRUCTURE| miRNA CATAAAGTAGAAAGCACTACT miRNA* TAGTGTTTCCTACTTTATGGA mismatches: 2 bulges: 0 |
pre-miRNA
CGACAGACAGACAGACAGTGCAGTCATCCATAAAGTAGAAAGCACTACTAACAGCGCTGTAGGGTGTAGTGTTTCCTACTTTATGGATGAGTGTACTGTG
GGCTTCGGAG
dot-bracket secondary structure
.....((.((.(..((((((((.(((((((((((((((.(((((((((..(((....))).....))))))))).))))))))))))))).)))))))).
.)))))....
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: Solexa
deep sequencing data evidence
references
[1] Murchison EP, Kheradpour P, Sachidanandam R, Smith C, Hodges E, Xuan Z, Kellis M, Grutzner F, Stark A, Hannon GJ, Genome Res. 18:995-1004(2008)., "Conservation of small RNA pathways in platypus"
CGACAGACAGACAGACAGTGCAGTCATCCATAAAGTAGAAAGCACTACTAACAGCGCTGTAGGGTGTAGTGTTTCCTACTTTATGGATGAGTGTACTGTG
GGCTTCGGAG
dot-bracket secondary structure
.....((.((.(..((((((((.(((((((((((((((.(((((((((..(((....))).....))))))))).))))))))))))))).)))))))).
.)))))....
SIMILARITIES| miRBase mml-mir-142: 5e-37 PMRD no hits microPC no hits | UniProt no hits RFAM mir-142: 4e-41 |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: Solexa
deep sequencing data evidence
references
[1] Murchison EP, Kheradpour P, Sachidanandam R, Smith C, Hodges E, Xuan Z, Kellis M, Grutzner F, Stark A, Hannon GJ, Genome Res. 18:995-1004(2008)., "Conservation of small RNA pathways in platypus"
