ABOUT THIS RECORDspecies: Ornithorhynchus anatinus
miRNA family: mir-143
source: miRBase, original name: oan-mir-143 (MI0006871)
SEQUENCE & STRUCTURE| miRNA TGAGATGAAGCACTGTAGCTC miRNA* GGTGCAGTGCTGCATCTCTGG mismatches: 4 bulges: 0 |
pre-miRNA
GATGTCTCCCAGCCCAAGGTGCAGTGCTGCATCTCTGGTCAGTTGTGAGTCTGAGATGAAGCACTGTAGCTCGGGAAGGGAGGAGCTGTC
dot-bracket secondary structure
....((((((..(((.((.(((((((((.((((((.(((((....))).)).)))))).))))))))).)).)))..)))))).......
SIMILARITIES
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miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: Solexa
references
[1] Murchison EP, Kheradpour P, Sachidanandam R, Smith C, Hodges E, Xuan Z, Kellis M, Grutzner F, Stark A, Hannon GJ, Genome Res. 18:995-1004(2008)., "Conservation of small RNA pathways in platypus"
GATGTCTCCCAGCCCAAGGTGCAGTGCTGCATCTCTGGTCAGTTGTGAGTCTGAGATGAAGCACTGTAGCTCGGGAAGGGAGGAGCTGTC
dot-bracket secondary structure
....((((((..(((.((.(((((((((.((((((.(((((....))).)).)))))).))))))))).)).)))..)))))).......
SIMILARITIES| miRBase xtr-mir-143: 6e-39 PMRD no hits microPC no hits | UniProt no hits RFAM mir-143: 8e-45 |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: Solexa
references
[1] Murchison EP, Kheradpour P, Sachidanandam R, Smith C, Hodges E, Xuan Z, Kellis M, Grutzner F, Stark A, Hannon GJ, Genome Res. 18:995-1004(2008)., "Conservation of small RNA pathways in platypus"
