ABOUT THIS RECORDspecies: Ornithorhynchus anatinus
miRNA family: mir-144
source: miRBase, original name: oan-mir-144 (MI0006723)
SEQUENCE & STRUCTURE| miRNA TACAGTATAGATGATGTACT miRNA* GATATCATCGTATACTGTAAG mismatches: 1 bulges: 1 |
pre-miRNA
GGCTTTGCCTGCTCTGAGGCGCCCCCATTGTTGCCCGGGGCCCTGGCGGGGATATCATCGTATACTGTAAGTTTGCTATGAGACACTACAGTATAGATGA
TGTACTAGCCCGGGTGCCCCAGCCCAGCAGGAGCC
dot-bracket secondary structure
((((...(((((((((.(((((((........(((...)))...(((.((.((((((((.(((((((((.((((......))))..))))))))))))))
))).)).))).))))))).)))...))))))))))
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: Solexa
references
[1] Murchison EP, Kheradpour P, Sachidanandam R, Smith C, Hodges E, Xuan Z, Kellis M, Grutzner F, Stark A, Hannon GJ, Genome Res. 18:995-1004(2008)., "Conservation of small RNA pathways in platypus"
GGCTTTGCCTGCTCTGAGGCGCCCCCATTGTTGCCCGGGGCCCTGGCGGGGATATCATCGTATACTGTAAGTTTGCTATGAGACACTACAGTATAGATGA
TGTACTAGCCCGGGTGCCCCAGCCCAGCAGGAGCC
dot-bracket secondary structure
((((...(((((((((.(((((((........(((...)))...(((.((.((((((((.(((((((((.((((......))))..))))))))))))))
))).)).))).))))))).)))...))))))))))
SIMILARITIES| miRBase hsa-mir-144: 4e-29 PMRD no hits microPC no hits | UniProt no hits RFAM mir-144: 4e-26 |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: Solexa
references
[1] Murchison EP, Kheradpour P, Sachidanandam R, Smith C, Hodges E, Xuan Z, Kellis M, Grutzner F, Stark A, Hannon GJ, Genome Res. 18:995-1004(2008)., "Conservation of small RNA pathways in platypus"
