ABOUT THIS RECORDspecies: Ornithorhynchus anatinus
miRNA family: mir-196
source: miRBase, original name: oan-mir-196b (MI0006869)
SEQUENCE & STRUCTURE| miRNA TAGGTAGTTTCCTGTTGTTGG miRNA* GACAGCACGACACTGCCTTCA mismatches: 3 bulges: 0 |
pre-miRNA
AACTGGTCTGTGATTTAGGTAGTTTCCTGTTGTTGGGGCTCCACCTTTCTCTCGACAGCACGACACTGCCTTCATTACTTCAGTT
dot-bracket secondary structure
((((((...(((((..(((((((.((.(((((((((((...........))))))))))).)).)))))))..))))).))))))
SIMILARITIES
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miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: Solexa
references
[1] Murchison EP, Kheradpour P, Sachidanandam R, Smith C, Hodges E, Xuan Z, Kellis M, Grutzner F, Stark A, Hannon GJ, Genome Res. 18:995-1004(2008)., "Conservation of small RNA pathways in platypus"
AACTGGTCTGTGATTTAGGTAGTTTCCTGTTGTTGGGGCTCCACCTTTCTCTCGACAGCACGACACTGCCTTCATTACTTCAGTT
dot-bracket secondary structure
((((((...(((((..(((((((.((.(((((((((((...........))))))))))).)).)))))))..))))).))))))
SIMILARITIES| miRBase mdo-mir-196b: 1e-40 PMRD no hits microPC no hits | UniProt no hits RFAM mir-196: 1e-27 |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: Solexa
references
[1] Murchison EP, Kheradpour P, Sachidanandam R, Smith C, Hodges E, Xuan Z, Kellis M, Grutzner F, Stark A, Hannon GJ, Genome Res. 18:995-1004(2008)., "Conservation of small RNA pathways in platypus"
