ABOUT THIS RECORDspecies: Ornithorhynchus anatinus
miRNA family: mir-199
source: miRBase, original name: oan-mir-199 (MI0006890)
SEQUENCE & STRUCTURE| miRNA ACAGTAGTCTGCACATTGGTT miRNA* CCAGTGTTCAGACTACCTGTTC mismatches: 3 bulges: 1 |
pre-miRNA
TAGAAGCGTCCGGAGATCCTGCTCCGTCGCCCCAGTGTTCAGACTACCTGTTCAGGACAATGCTGTTGTACAGTAGTCTGCACATTGGTTAGACTGGGCA
AGGGAAAGCGGCGAAATG
dot-bracket secondary structure
......((.(((....((((((((.(((...(((((((.((((((((.(((.(((.......)))....))))))))))).)))))))...))).)))).
))))....))))).....
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: Solexa
deep sequencing data evidence
references
[1] Murchison EP, Kheradpour P, Sachidanandam R, Smith C, Hodges E, Xuan Z, Kellis M, Grutzner F, Stark A, Hannon GJ, Genome Res. 18:995-1004(2008)., "Conservation of small RNA pathways in platypus"
TAGAAGCGTCCGGAGATCCTGCTCCGTCGCCCCAGTGTTCAGACTACCTGTTCAGGACAATGCTGTTGTACAGTAGTCTGCACATTGGTTAGACTGGGCA
AGGGAAAGCGGCGAAATG
dot-bracket secondary structure
......((.(((....((((((((.(((...(((((((.((((((((.(((.(((.......)))....))))))))))).)))))))...))).)))).
))))....))))).....
SIMILARITIES| miRBase tgu-mir-199-2: 1e-56 PMRD no hits microPC no hits | UniProt no hits RFAM mir-199: 1e-50 |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: Solexa
deep sequencing data evidence
references
[1] Murchison EP, Kheradpour P, Sachidanandam R, Smith C, Hodges E, Xuan Z, Kellis M, Grutzner F, Stark A, Hannon GJ, Genome Res. 18:995-1004(2008)., "Conservation of small RNA pathways in platypus"
