ABOUT THIS RECORDspecies: Ornithorhynchus anatinus
miRNA family: mir-205
source: miRBase, original name: oan-mir-205 (MI0006703)
SEQUENCE & STRUCTURE| miRNA TCCTTCATTCCACCGGAGTCT miRNA* ATTTCAGTGGAGTGAAGCACA mismatches: 2 bulges: 0 |
pre-miRNA
GAATTCGGAACGATCCATGGGTTTCTGTTGTCCTTCATTCCACCGGAGTCTGTTTCGTACCTAATCAGATTTCAGTGGAGTGAAGCACAAGAGGCATGGA
GTTGAATC
dot-bracket secondary structure
..((((((.....((((((....(((.((((.(((((((((((.((((((((.............)))))))).))))))))))).)))).)))))))))
.)))))).
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: Solexa
references
[1] Murchison EP, Kheradpour P, Sachidanandam R, Smith C, Hodges E, Xuan Z, Kellis M, Grutzner F, Stark A, Hannon GJ, Genome Res. 18:995-1004(2008)., "Conservation of small RNA pathways in platypus"
GAATTCGGAACGATCCATGGGTTTCTGTTGTCCTTCATTCCACCGGAGTCTGTTTCGTACCTAATCAGATTTCAGTGGAGTGAAGCACAAGAGGCATGGA
GTTGAATC
dot-bracket secondary structure
..((((((.....((((((....(((.((((.(((((((((((.((((((((.............)))))))).))))))))))).)))).)))))))))
.)))))).
SIMILARITIES| miRBase gga-mir-205a: 2e-33 PMRD no hits microPC no hits | UniProt no hits RFAM mir-205: 3e-32 |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: Solexa
references
[1] Murchison EP, Kheradpour P, Sachidanandam R, Smith C, Hodges E, Xuan Z, Kellis M, Grutzner F, Stark A, Hannon GJ, Genome Res. 18:995-1004(2008)., "Conservation of small RNA pathways in platypus"
