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ABOUT THIS RECORD
ID:
MNEST032050
species:
Mus musculus
source:
miRBase, original name:
mmu-mir-378b
(
MI0016973
)
Taxonomy by NCBI:
Mus musculus
Mus
Mus
Murinae
Muridae
Muroidea
Sciurognathi
Rodentia
Glires
Euarchontoglires
Eutheria
Theria
Mammalia
Amniota
Tetrapoda
Sarcopterygii
Euteleostomi
Teleostomi
Gnathostomata
Vertebrata
Craniata
Chordata
Deuterostomia
Coelomata
Bilateria
Eumetazoa
Metazoa
Fungi/Metazoa group
Eukaryota
cellular organisms
SEQUENCE & STRUCTURE
miRNA
CTGGACTTGGAGTCAGAAGA
miRNA*
CTGGGCTATCCCAGTCCAGGC
mismatches:
2
bulges:
5
View larger
pre-miRNA
TGTC
CTGGGCTATCCCAGTCCAGGC
AGTACCCTCAGGAGGCAGGTACGATGGATAGAGAGGGAACC
CTGGACTTGGAGTCAGAAGA
CCTGAG
dot-bracket secondary structure
.(((
((((....(((.((((((((.
.((.(((((...(..((.......))..)...))))).)))
))))))).))).))))..))
).....
SIMILARITIES
miRBase
rno-mir-3557
:
0.00002
PMRD
no hits
microPC
no hits
UniProt
no hits
RFAM
no hits
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction:
true miRNA
additional data
download this record
evidence:
Solexa
references
[
1
] Fehniger TA, Wylie T, Germino E, Leong JW, Magrini VJ, Koul S, Keppel CR, Schneider SE, Koboldt DC, Sullivan RP, Heinz ME, Crosby SD, Nagarajan R, Ramsingh G, Link DC, Ley TJ, Mardis ER,
Genome Res. 20:1590-1604(2010).
,
"Next-generation sequencing identifies the natural killer cell microRNA transcriptome"