ABOUT THIS RECORDspecies: Mus musculus
miRNA family: miR-709
source: miRBase, original name: mmu-mir-709 (MI0004693)
Taxonomy by NCBI:
Mus musculus Mus Mus Murinae Muridae Muroidea Sciurognathi Rodentia Glires Euarchontoglires Eutheria Theria Mammalia Amniota Tetrapoda Sarcopterygii Euteleostomi Teleostomi Gnathostomata Vertebrata Craniata Chordata Deuterostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA GGAGGCAGAGGCAGGAGGA miRNA* CCGTTTCTCTGCTTCTACTC mismatches: 2 bulges: 3 |
pre-miRNA
TGTCCCGTTTCTCTGCTTCTACTCAGAAGTGCTCTGAGCATAGAACTGTCCTGTTTGAGCAGCACTGGGGAGGCAGAGGCAGGAGGAT
dot-bracket secondary structure
.(((((.(.((((((((((..(((((...(((((.(((((..((....)).))))))))))...))))))))))))))).).).))))
SIMILARITIES
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miRNEST target predictions: none
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
evidence: MPSS
references
[1] Mineno J, Okamoto S, Ando T, Sato M, Chono H, Izu H, Takayama M, Asada K, Mirochnitchenko O, Inouye M, Kato I, Nucleic Acids Res. 34:1765-1771(2006)., "The expression profile of microRNAs in mouse embryos"
TGTCCCGTTTCTCTGCTTCTACTCAGAAGTGCTCTGAGCATAGAACTGTCCTGTTTGAGCAGCACTGGGGAGGCAGAGGCAGGAGGAT
dot-bracket secondary structure
.(((((.(.((((((((((..(((((...(((((.(((((..((....)).))))))))))...))))))))))))))).).).))))
SIMILARITIES| miRBase mmu-mir-3470b: 0.0003 PMRD no hits microPC no hits | UniProt no hits RFAM no hits |
MOREmiRNEST target predictions: none
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
evidence: MPSS
references
[1] Mineno J, Okamoto S, Ando T, Sato M, Chono H, Izu H, Takayama M, Asada K, Mirochnitchenko O, Inouye M, Kato I, Nucleic Acids Res. 34:1765-1771(2006)., "The expression profile of microRNAs in mouse embryos"
