ABOUT THIS RECORDspecies: Mus musculus
source: miRBase, original name: mmu-mir-804 (MI0005203)
Taxonomy by NCBI:
Mus musculus Mus Mus Murinae Muridae Muroidea Sciurognathi Rodentia Glires Euarchontoglires Eutheria Theria Mammalia Amniota Tetrapoda Sarcopterygii Euteleostomi Teleostomi Gnathostomata Vertebrata Craniata Chordata Deuterostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGTGAGTTGTTCCTCACCTGGA miRNA* TTTGAGGTTACAACTTCCCCAGT mismatches: 3 bulges: 5 |
pre-miRNA
CCCTACACATCCATCTTTGAGGTTACAACTTCCCCAGTAGACTGTTTCCTGACATTCCTTGTGAGTTGTTCCTCACCTGGAAGATGTGGTGGCGG
dot-bracket secondary structure
(((((((((((..(((.(((((..(((((((...(((..((.((((....)))).)).))).))))))).)))))...))).))))).)))).))
SIMILARITIES
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miRNEST target predictions: none
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
evidence: miRAP-cloned
references
[1] Takada S, Berezikov E, Yamashita Y, Lagos-Quintana M, Kloosterman WP, Enomoto M, Hatanaka H, Fujiwara S, Watanabe H, Soda M, Choi YL, Plasterk RH, Cuppen E, Mano H, Nucleic Acids Res. 34:e115(2006)., "Mouse microRNA profiles determined with a new and sensitive cloning method"
CCCTACACATCCATCTTTGAGGTTACAACTTCCCCAGTAGACTGTTTCCTGACATTCCTTGTGAGTTGTTCCTCACCTGGAAGATGTGGTGGCGG
dot-bracket secondary structure
(((((((((((..(((.(((((..(((((((...(((..((.((((....)))).)).))).))))))).)))))...))).))))).)))).))
SIMILARITIES| miRBase no hits PMRD no hits microPC no hits | UniProt no hits RFAM no hits |
MOREmiRNEST target predictions: none
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
evidence: miRAP-cloned
references
[1] Takada S, Berezikov E, Yamashita Y, Lagos-Quintana M, Kloosterman WP, Enomoto M, Hatanaka H, Fujiwara S, Watanabe H, Soda M, Choi YL, Plasterk RH, Cuppen E, Mano H, Nucleic Acids Res. 34:e115(2006)., "Mouse microRNA profiles determined with a new and sensitive cloning method"
