ABOUT THIS RECORDspecies: Mus musculus
miRNA family: miR-1199
source: miRBase, original name: mmu-mir-1199 (MI0006307)
Taxonomy by NCBI:
Mus musculus Mus Mus Murinae Muridae Muroidea Sciurognathi Rodentia Glires Euarchontoglires Eutheria Theria Mammalia Amniota Tetrapoda Sarcopterygii Euteleostomi Teleostomi Gnathostomata Vertebrata Craniata Chordata Deuterostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TCTGAGTCCCGGTCGCGCGG miRNA* GTGCGGCCGGTGCTCAGTCG mismatches: 4 bulges: 0 |
pre-miRNA
AGCCTGCGCCGGAGCCGGGGTCTGAGTCCCGGTCGCGCGGGCGAGGAACTCATTGAGTTGCGCGTGCGGCCGGTGCTCAGTCGGCCCGGCTCCGGTACTC
CGCTGCCGCGCGCCCTGGA
dot-bracket secondary structure
..((.(..((((((((((((.(((((..(((((((((((.(((....((((...))))))).)))))))))))..))))).)..)))))))))))..)..
(((......)))....)).
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
evidence: 454, Solexa
references
[1] Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel DP, Genes Dev. 24:992-1009(2010)., "Mammalian microRNAs: experimental evaluation of novel and previously annotated genes"
[2] Calabrese JM, Seila AC, Yeo GW, Sharp PA, Proc Natl Acad Sci U S A. 104:18097-18102(2007)., "RNA sequence analysis defines Dicer's role in mouse embryonic stem cells"
AGCCTGCGCCGGAGCCGGGGTCTGAGTCCCGGTCGCGCGGGCGAGGAACTCATTGAGTTGCGCGTGCGGCCGGTGCTCAGTCGGCCCGGCTCCGGTACTC
CGCTGCCGCGCGCCCTGGA
dot-bracket secondary structure
..((.(..((((((((((((.(((((..(((((((((((.(((....((((...))))))).)))))))))))..))))).)..)))))))))))..)..
(((......)))....)).
SIMILARITIES| miRBase no hits PMRD no hits microPC no hits | UniProt sp|Q96FF7|YS003_HUMAN: 0.0007 RFAM no hits |
MOREmiRNEST target predictions: none
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
evidence: 454, Solexa
references
[1] Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel DP, Genes Dev. 24:992-1009(2010)., "Mammalian microRNAs: experimental evaluation of novel and previously annotated genes"
[2] Calabrese JM, Seila AC, Yeo GW, Sharp PA, Proc Natl Acad Sci U S A. 104:18097-18102(2007)., "RNA sequence analysis defines Dicer's role in mouse embryonic stem cells"
