ABOUT THIS RECORDspecies: Mus musculus
miRNA family: mir-1251
source: miRBase, original name: mmu-mir-1251 (MI0014021)
Taxonomy by NCBI:
Mus musculus Mus Mus Murinae Muridae Muroidea Sciurognathi Rodentia Glires Euarchontoglires Eutheria Theria Mammalia Amniota Tetrapoda Sarcopterygii Euteleostomi Teleostomi Gnathostomata Vertebrata Craniata Chordata Deuterostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA ACTCTAGCTGCCAAAGGCGCT miRNA* CGCTTTGCTCAGCCAGTGTAG mismatches: 5 bulges: 0 |
pre-miRNA
GTCAGCTATGTGGACTCTAGCTGCCAAAGGCGCTTCTCCTTCTGAACAGAGCGCTTTGCTCAGCCAGTGTAGACATGGCCTGAT
dot-bracket secondary structure
(((((((((((..((.((.((((...(((((((((.((.....))...)))))))))...)))).)).))..)))))).)))))
SIMILARITIES
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miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: Solexa
deep sequencing data evidence
references
[1] Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel DP, Genes Dev. 24:992-1009(2010)., "Mammalian microRNAs: experimental evaluation of novel and previously annotated genes"
GTCAGCTATGTGGACTCTAGCTGCCAAAGGCGCTTCTCCTTCTGAACAGAGCGCTTTGCTCAGCCAGTGTAGACATGGCCTGAT
dot-bracket secondary structure
(((((((((((..((.((.((((...(((((((((.((.....))...)))))))))...)))).)).))..)))))).)))))
SIMILARITIES| miRBase hsa-mir-1251: 3e-34 PMRD no hits microPC no hits | UniProt no hits RFAM mir-1251: 2e-36 |
Identical with: ptr-mir-1251 from miRBase (MNEST030674) |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: Solexa
deep sequencing data evidence
references
[1] Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel DP, Genes Dev. 24:992-1009(2010)., "Mammalian microRNAs: experimental evaluation of novel and previously annotated genes"
