ABOUT THIS RECORDspecies: Mus musculus
miRNA family: mir-1839
source: miRBase, original name: mmu-mir-1839 (MI0009991)
Taxonomy by NCBI:
Mus musculus Mus Mus Murinae Muridae Muroidea Sciurognathi Rodentia Glires Euarchontoglires Eutheria Theria Mammalia Amniota Tetrapoda Sarcopterygii Euteleostomi Teleostomi Gnathostomata Vertebrata Craniata Chordata Deuterostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA AAGGTAGATAGAACAGGTCTTG miRNA* AGACCTACTTATCTACCAACA mismatches: 4 bulges: 1 |
pre-miRNA
GAAAAGGTAGATAGAACAGGTCTTGTTTGCAAAATAAATTCAAGACCTACTTATCTACCAACAGCCATTGCCT
dot-bracket secondary structure
.....(((((((((...((((((((..(.........)..))))))))..)))))))))..............
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
evidence: Solexa
deep sequencing data evidence
references
[1] Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel DP, Genes Dev. 24:992-1009(2010)., "Mammalian microRNAs: experimental evaluation of novel and previously annotated genes"
[2] Babiarz JE, Ruby JG, Wang Y, Bartel DP, Blelloch R, Genes Dev. 22:2773-2785(2008)., "Mouse ES cells express endogenous shRNAs, siRNAs, and other Microprocessor-independent, Dicer-dependent small RNAs"
GAAAAGGTAGATAGAACAGGTCTTGTTTGCAAAATAAATTCAAGACCTACTTATCTACCAACAGCCATTGCCT
dot-bracket secondary structure
.....(((((((((...((((((((..(.........)..))))))))..)))))))))..............
SIMILARITIES| miRBase mmu-mir-1839: 5e-36 PMRD no hits microPC no hits | UniProt no hits RFAM SCARNA15: 2e-29 |
Identical with: eca-mir-1839 from miRBase (MNEST027309) |
MOREmiRNEST target predictions: none
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
evidence: Solexa
deep sequencing data evidence
references
[1] Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel DP, Genes Dev. 24:992-1009(2010)., "Mammalian microRNAs: experimental evaluation of novel and previously annotated genes"
[2] Babiarz JE, Ruby JG, Wang Y, Bartel DP, Blelloch R, Genes Dev. 22:2773-2785(2008)., "Mouse ES cells express endogenous shRNAs, siRNAs, and other Microprocessor-independent, Dicer-dependent small RNAs"
