ABOUT THIS RECORDspecies: Mus musculus
source: miRBase, original name: mmu-mir-1894 (MI0008326)
Taxonomy by NCBI:
Mus musculus Mus Mus Murinae Muridae Muroidea Sciurognathi Rodentia Glires Euarchontoglires Eutheria Theria Mammalia Amniota Tetrapoda Sarcopterygii Euteleostomi Teleostomi Gnathostomata Vertebrata Craniata Chordata Deuterostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA GCAAGGGAGAGGGTGAAGGGAG miRNA* CCCCTACCACCTGCCTCTTCCCT mismatches: 4 bulges: 3 |
pre-miRNA
TCTTTGTTCTCTCTCCCCTACCACCTGCCTCTTCCCTGCTGTGGAGCAGGCAAGGGAGAGGGTGAAGGGAGGGCCAGCCAG
dot-bracket secondary structure
.....(((..(((((((....(((((.((((((.((((((....)))))).))))).).)))))..)))))))..)))...
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
evidence: microarray, PCR
references
[1] He S, Su H, Liu C, Skogerbo G, He H, He D, Zhu X, Liu T, Zhao Y, Chen R, BMC Genomics. 9:236(2008)., "MicroRNA-encoding long non-coding RNAs"
TCTTTGTTCTCTCTCCCCTACCACCTGCCTCTTCCCTGCTGTGGAGCAGGCAAGGGAGAGGGTGAAGGGAGGGCCAGCCAG
dot-bracket secondary structure
.....(((..(((((((....(((((.((((((.((((((....)))))).))))).).)))))..)))))))..)))...
SIMILARITIES| miRBase mmu-mir-1894: 9e-41 PMRD no hits microPC no hits | UniProt no hits RFAM no hits |
MOREmiRNEST target predictions: none
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
evidence: microarray, PCR
references
[1] He S, Su H, Liu C, Skogerbo G, He H, He D, Zhu X, Liu T, Zhao Y, Chen R, BMC Genomics. 9:236(2008)., "MicroRNA-encoding long non-coding RNAs"
