ABOUT THIS RECORDspecies: Mus musculus
source: miRBase, original name: mmu-mir-1940 (MI0009929)
Taxonomy by NCBI:
Mus musculus Mus Mus Murinae Muridae Muroidea Sciurognathi Rodentia Glires Euarchontoglires Eutheria Theria Mammalia Amniota Tetrapoda Sarcopterygii Euteleostomi Teleostomi Gnathostomata Vertebrata Craniata Chordata Deuterostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA ATGGAGGACTGAGAAGGTGGAGCAGTT miRNA* CTGCCTTCCATTGGTTAAGACCTCCAACA mismatches: 6 bulges: 2 |
pre-miRNA
AGCCAGGATGCAGCCTGCTATGGAGGACTGAGAAGGTGGAGCAGTTCTGTACCGTGCTGCCTTCCATTGGTTAAGACCTCCAACAGTAAAGGGCTGGCCG
GCCA
dot-bracket secondary structure
.(((.((...(((((((((.((((((.((.((..(((((((((((.(......).)))))..))))))..)).)).))))))..)))...)))))).)))
))..
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
evidence: Solexa
references
[1] Kuchenbauer F, Morin RD, Argiropoulos B, Petriv OI, Griffith M, Heuser M, Yung E, Piper J, Delaney A, Prabhu AL, Zhao Y, McDonald H, Zeng T, Hirst M, Hansen CL, Marra MA, Humphries RK, Genome Res. 18:1787-1797(2008)., "In-depth characterization of the microRNA transcriptome in a leukemia progression model"
AGCCAGGATGCAGCCTGCTATGGAGGACTGAGAAGGTGGAGCAGTTCTGTACCGTGCTGCCTTCCATTGGTTAAGACCTCCAACAGTAAAGGGCTGGCCG
GCCA
dot-bracket secondary structure
.(((.((...(((((((((.((((((.((.((..(((((((((((.(......).)))))..))))))..)).)).))))))..)))...)))))).)))
))..
SIMILARITIES| miRBase no hits PMRD no hits microPC no hits | UniProt no hits RFAM SNORA47: 4e-41 |
MOREmiRNEST target predictions: none
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
evidence: Solexa
references
[1] Kuchenbauer F, Morin RD, Argiropoulos B, Petriv OI, Griffith M, Heuser M, Yung E, Piper J, Delaney A, Prabhu AL, Zhao Y, McDonald H, Zeng T, Hirst M, Hansen CL, Marra MA, Humphries RK, Genome Res. 18:1787-1797(2008)., "In-depth characterization of the microRNA transcriptome in a leukemia progression model"
