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ABOUT THIS RECORD
ID:
MNEST032458
species:
Mus musculus
miRNA family:
mir-1954
source:
miRBase, original name:
mmu-mir-1954
(
MI0009949
)
Taxonomy by NCBI:
Mus musculus
Mus
Mus
Murinae
Muridae
Muroidea
Sciurognathi
Rodentia
Glires
Euarchontoglires
Eutheria
Theria
Mammalia
Amniota
Tetrapoda
Sarcopterygii
Euteleostomi
Teleostomi
Gnathostomata
Vertebrata
Craniata
Chordata
Deuterostomia
Coelomata
Bilateria
Eumetazoa
Metazoa
Fungi/Metazoa group
Eukaryota
cellular organisms
SEQUENCE & STRUCTURE
miRNA
ACTGCAGAGTGAGACCCTGTT
miRNA*
CGGGGTTTCTCTGTGTAGCCC
mismatches:
3
bulges:
0
View larger
pre-miRNA
GAGGTCAGCCAGA
ACTGCAGAGTGAGACCCTGTT
GTTTGTTTGTTTGTTTGAGA
CGGGGTTTCTCTGTGTAGCCC
TGGCTATCCTA
dot-bracket secondary structure
.(((..((((((.
.(((((.((.(((((((((((
..................))
))))))))).)).)))))..)
)))))..))).
SIMILARITIES
miRBase
mmu-mir-5098
:
0.000000001
PMRD
no hits
microPC
no hits
UniProt
no hits
RFAM
7SK: 0.000001
MORE
miRNEST target predictions: none
non-miRNEST targets
HuntMi prediction:
true miRNA
additional data
download this record
evidence:
Solexa
references
[
1
] Kuchenbauer F, Morin RD, Argiropoulos B, Petriv OI, Griffith M, Heuser M, Yung E, Piper J, Delaney A, Prabhu AL, Zhao Y, McDonald H, Zeng T, Hirst M, Hansen CL, Marra MA, Humphries RK,
Genome Res. 18:1787-1797(2008).
,
"In-depth characterization of the microRNA transcriptome in a leukemia progression model"