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ABOUT THIS RECORD

ID: MNEST032463
species: Mus musculus
miRNA family: miR-1958
source: miRBase, original name: mmu-mir-1958 (MI0009955)

Taxonomy by NCBI:
Mus musculus Mus Mus Murinae Muridae Muroidea Sciurognathi Rodentia Glires Euarchontoglires Eutheria Theria Mammalia Amniota Tetrapoda Sarcopterygii Euteleostomi Teleostomi Gnathostomata Vertebrata Craniata Chordata Deuterostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
TAGGAAAGTGGAAGCAGTAAGT

miRNA*
TTACTGCTTCCACTTTCCTATA

mismatches: 0
bulges: 0

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pre-miRNA
AGCCTAGAAGAGAACTTACTGCTTCCACTTTCCTATAGTTTAATTTCTAACTGCATTCTATAGGAAAGTGGAAGCAGTAAGTTCTCTTCTAGGTTCC

dot-bracket secondary structure
((((((((((((((((((((((((((((((((((((((...................))))))))))))))))))))))))))))))))))))))..


SIMILARITIES
miRBase no hits

PMRD no hits

microPC no hits
UniProt no hits

RFAM no hits

MORE

miRNEST target predictions: none
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
evidence: Solexa
deep sequencing data evidence

references

[1] Kuchenbauer F, Morin RD, Argiropoulos B, Petriv OI, Griffith M, Heuser M, Yung E, Piper J, Delaney A, Prabhu AL, Zhao Y, McDonald H, Zeng T, Hirst M, Hansen CL, Marra MA, Humphries RK, Genome Res. 18:1787-1797(2008)., "In-depth characterization of the microRNA transcriptome in a leukemia progression model"




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