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ABOUT THIS RECORD
ID:
MNEST032477
species:
Mus musculus
source:
miRBase, original name:
mmu-mir-1981
(
MI0009992
)
Taxonomy by NCBI:
Mus musculus
Mus
Mus
Murinae
Muridae
Muroidea
Sciurognathi
Rodentia
Glires
Euarchontoglires
Eutheria
Theria
Mammalia
Amniota
Tetrapoda
Sarcopterygii
Euteleostomi
Teleostomi
Gnathostomata
Vertebrata
Craniata
Chordata
Deuterostomia
Coelomata
Bilateria
Eumetazoa
Metazoa
Fungi/Metazoa group
Eukaryota
cellular organisms
SEQUENCE & STRUCTURE
miRNA
GTAAAGGCTGGGCTTAGACGTGGC
miRNA*
CATCTAACCCTGGCCTTTGACA
mismatches:
4
bulges:
2
View larger
pre-miRNA
GTAAAGGCTGGGCTTAGACGTGGC
CTTTGGGTGTGGAATGCACTTCCGTTTGTAACCGC
CATCTAACCCTGGCCTTTGACA
G
dot-bracket secondary structure
.(((((((..((.(((((..((((
..(((.(..(((((.....)))))..).)))..))
))))))).))..)))))))...
.
SIMILARITIES
miRBase
no hits
PMRD
no hits
microPC
no hits
UniProt
no hits
RFAM
no hits
MORE
miRNEST target predictions: none
non-miRNEST targets
HuntMi prediction:
true miRNA
additional data
download this record
evidence:
Solexa
references
[
1
] Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel DP,
Genes Dev. 24:992-1009(2010).
,
"Mammalian microRNAs: experimental evaluation of novel and previously annotated genes"
[
2
] Zhu JY, Strehle M, Frohn A, Kremmer E, Hofig KP, Meister G, Adler H,
J Virol. 84:10266-10275(2010).
,
"Identification and analysis of expression of novel microRNAs of murine gammaherpesvirus 68"
[
3
] Babiarz JE, Ruby JG, Wang Y, Bartel DP, Blelloch R,
Genes Dev. 22:2773-2785(2008).
,
"Mouse ES cells express endogenous shRNAs, siRNAs, and other Microprocessor-independent, Dicer-dependent small RNAs"