ABOUT THIS RECORDspecies: Mus musculus
source: miRBase, original name: mmu-mir-1983 (MI0009990)
Taxonomy by NCBI:
Mus musculus Mus Mus Murinae Muridae Muroidea Sciurognathi Rodentia Glires Euarchontoglires Eutheria Theria Mammalia Amniota Tetrapoda Sarcopterygii Euteleostomi Teleostomi Gnathostomata Vertebrata Craniata Chordata Deuterostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA CTCACCTGGAGCATGTTTTCT miRNA* AAAGCATGCTCCAGTGGC mismatches: 1 bulges: 3 |
pre-miRNA
CCTTTACAGAGAAAGCATGCTCCAGTGGCGCAATCGGTTAGCGCGCGGTACTTATACAGCAGTATATGTGCGGGTGATGCCGAGGTTGTGAGTTCGAGCC
TCACCTGGAGCATGTTTTCTTCCCTTTCCGCC
dot-bracket secondary structure
........(((((((((((((((((.((((((((((((...(((.(.((((.(((((....))))).)))).))))..)))))..))))........)))
....)))))))))))))))))...........
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
evidence: Solexa
references
[1] Babiarz JE, Ruby JG, Wang Y, Bartel DP, Blelloch R, Genes Dev. 22:2773-2785(2008)., "Mouse ES cells express endogenous shRNAs, siRNAs, and other Microprocessor-independent, Dicer-dependent small RNAs"
CCTTTACAGAGAAAGCATGCTCCAGTGGCGCAATCGGTTAGCGCGCGGTACTTATACAGCAGTATATGTGCGGGTGATGCCGAGGTTGTGAGTTCGAGCC
TCACCTGGAGCATGTTTTCTTCCCTTTCCGCC
dot-bracket secondary structure
........(((((((((((((((((.((((((((((((...(((.(.((((.(((((....))))).)))).))))..)))))..))))........)))
....)))))))))))))))))...........
SIMILARITIES| miRBase no hits PMRD no hits microPC no hits | UniProt no hits RFAM tRNA: 9e-21 |
MOREmiRNEST target predictions: none
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
evidence: Solexa
references
[1] Babiarz JE, Ruby JG, Wang Y, Bartel DP, Blelloch R, Genes Dev. 22:2773-2785(2008)., "Mouse ES cells express endogenous shRNAs, siRNAs, and other Microprocessor-independent, Dicer-dependent small RNAs"
