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ABOUT THIS RECORD

ID: MNEST032489
species: Mus musculus
miRNA family: miR-3058
source: miRBase, original name: mmu-mir-3058 (MI0004418)

Taxonomy by NCBI:
Mus musculus Mus Mus Murinae Muridae Muroidea Sciurognathi Rodentia Glires Euarchontoglires Eutheria Theria Mammalia Amniota Tetrapoda Sarcopterygii Euteleostomi Teleostomi Gnathostomata Vertebrata Craniata Chordata Deuterostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
TCAGCCACGGCTTACCTGGAAGA

miRNA*
TTCCTGTCAGCCGTGGGTGCCT

mismatches: 4
bulges: 1

View larger
pre-miRNA
TCCAGCGTTGGAGTCAGCCACGGCTTACCTGGAAGATTGAATGTCTACTTGGCTTTCTTCCTGTCAGCCGTGGGTGCCTCTTGCTACTGGA

dot-bracket secondary structure
(((((.((.((((.((.((((((((.((..((((((......(((.....)))..)))))).)).)))))))).)).)))).))..)))))


SIMILARITIES
miRBase no hits

PMRD no hits

microPC no hits
UniProt no hits

RFAM no hits

MORE

miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: Solexa

references

[1] Berezikov E, van Tetering G, Verheul M, van de Belt J, van Laake L, Vos J, Verloop R, van de Wetering M, Guryev V, Takada S, van Zonneveld AJ, Mano H, Plasterk R, Cuppen E, Genome Res. 16:1289-1298(2006)., "Many novel mammalian microRNA candidates identified by extensive cloning and RAKE analysis"
[2] Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel DP, Genes Dev. 24:992-1009(2010)., "Mammalian microRNAs: experimental evaluation of novel and previously annotated genes"




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