ABOUT THIS RECORDspecies: Mus musculus
source: miRBase, original name: mmu-mir-5100 (MI0018008)
Taxonomy by NCBI:
Mus musculus Mus Mus Murinae Muridae Muroidea Sciurognathi Rodentia Glires Euarchontoglires Eutheria Theria Mammalia Amniota Tetrapoda Sarcopterygii Euteleostomi Teleostomi Gnathostomata Vertebrata Craniata Chordata Deuterostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TCGAATCCCAGCGGTGCCTCT miRNA* AGGACTTGGGAACTGAAG mismatches: 2 bulges: 3 |
pre-miRNA
GTGGGAGGGAGGACTTGGGAACTGAAGAGCAGAGTTCGAATCCCAGCGGTGCCTCTTCCCGACT
dot-bracket secondary structure
((.((..(((((((((((((..((((........))))..)))))..))).)))))..)).)).
SIMILARITIES
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miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: Solexa
references
[1] Spierings DC, McGoldrick D, Hamilton-Easton AM, Neale G, Murchison EP, Hannon GJ, Green DR, Withoff S, Blood. [Epub prior to print](2011)., "Ordered progression of stage specific miRNA profiles in the mouse B2 B cell lineage"
GTGGGAGGGAGGACTTGGGAACTGAAGAGCAGAGTTCGAATCCCAGCGGTGCCTCTTCCCGACT
dot-bracket secondary structure
((.((..(((((((((((((..((((........))))..)))))..))).)))))..)).)).
SIMILARITIES| miRBase hsa-mir-3676: 0.00001 PMRD no hits microPC no hits | UniProt no hits RFAM no hits |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: Solexa
references
[1] Spierings DC, McGoldrick D, Hamilton-Easton AM, Neale G, Murchison EP, Hannon GJ, Green DR, Withoff S, Blood. [Epub prior to print](2011)., "Ordered progression of stage specific miRNA profiles in the mouse B2 B cell lineage"
