ABOUT THIS RECORDspecies: Mus musculus
source: miRBase, original name: mmu-mir-5133 (MI0018045)
Taxonomy by NCBI:
Mus musculus Mus Mus Murinae Muridae Muroidea Sciurognathi Rodentia Glires Euarchontoglires Eutheria Theria Mammalia Amniota Tetrapoda Sarcopterygii Euteleostomi Teleostomi Gnathostomata Vertebrata Craniata Chordata Deuterostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA GCTGGAGCTGCGGCAGCGCAG miRNA* CCGTGTCTCTGCCGCTCGCTTCAGTTTTCCT mismatches: 2 bulges: 8 |
pre-miRNA
CGCCGAGAGGCTGGAGCTGCGGCAGCGCAGGCCTGGGCCGCCGTGTCTCTGCCGCTCGCTTCAGTTTTCCTCAGGGC
dot-bracket secondary structure
.(((..(((((((((((.((((((((((.(((....)))...)))...)))))))..)))))))....))))..)))
SIMILARITIES
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miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: Solexa
references
[1] Spierings DC, McGoldrick D, Hamilton-Easton AM, Neale G, Murchison EP, Hannon GJ, Green DR, Withoff S, Blood. [Epub prior to print](2011)., "Ordered progression of stage specific miRNA profiles in the mouse B2 B cell lineage"
CGCCGAGAGGCTGGAGCTGCGGCAGCGCAGGCCTGGGCCGCCGTGTCTCTGCCGCTCGCTTCAGTTTTCCTCAGGGC
dot-bracket secondary structure
.(((..(((((((((((.((((((((((.(((....)))...)))...)))))))..)))))))....))))..)))
SIMILARITIES| miRBase no hits PMRD no hits microPC no hits | UniProt no hits RFAM no hits |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: Solexa
references
[1] Spierings DC, McGoldrick D, Hamilton-Easton AM, Neale G, Murchison EP, Hannon GJ, Green DR, Withoff S, Blood. [Epub prior to print](2011)., "Ordered progression of stage specific miRNA profiles in the mouse B2 B cell lineage"
