ABOUT THIS RECORDspecies: Rattus norvegicus
miRNA family: miR-295
source: miRBase, original name: rno-mir-295-2 (MI0015968)
Taxonomy by NCBI:
Rattus norvegicus Rattus Murinae Muridae Muroidea Sciurognathi Rodentia Glires Euarchontoglires Eutheria Theria Mammalia Amniota Tetrapoda Sarcopterygii Euteleostomi Teleostomi Gnathostomata Vertebrata Craniata Chordata Deuterostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA ACTCAAATGTGGGGCACACTTCT miRNA* AAAGTGCTACTACTTTTGGGTGT mismatches: 2 bulges: 2 |
pre-miRNA
CATTTTGGTGAGACTCAAATGTGGGGCACACTTCTGGATTATGCGTAGAAAGTGCTACTACTTTTGGGTGTCTCCTGTGGG
dot-bracket secondary structure
(((...((.((.(((((((.(((((((((..((((((......).))))).))))).)))).))))))).)).)).)))..
SIMILARITIES
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miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: SOLiD
references
[1] Linsen SE, de Wit E, de Bruijn E, Cuppen E, BMC Genomics. 11:249(2010)., "Small RNA expression and strain specificity in the rat"
[2] Artzi S, Kiezun A, Shomron N, BMC Bioinformatics. 9:39(2008)., "miRNAminer: a tool for homologous microRNA gene search"
CATTTTGGTGAGACTCAAATGTGGGGCACACTTCTGGATTATGCGTAGAAAGTGCTACTACTTTTGGGTGTCTCCTGTGGG
dot-bracket secondary structure
(((...((.((.(((((((.(((((((((..((((((......).))))).))))).)))).))))))).)).)).)))..
SIMILARITIES| miRBase rno-mir-295-1: 9e-41 PMRD no hits microPC no hits | UniProt no hits RFAM mir-290: 3e-22 |
Identical with: rno-mir-295-1 from miRBase (MNEST032829) |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: SOLiD
references
[1] Linsen SE, de Wit E, de Bruijn E, Cuppen E, BMC Genomics. 11:249(2010)., "Small RNA expression and strain specificity in the rat"
[2] Artzi S, Kiezun A, Shomron N, BMC Bioinformatics. 9:39(2008)., "miRNAminer: a tool for homologous microRNA gene search"
