ABOUT THIS RECORDspecies: Rattus norvegicus
miRNA family: mir-350
source: miRBase, original name: rno-mir-350 (MI0000639)
Taxonomy by NCBI:
Rattus norvegicus Rattus Murinae Muridae Muroidea Sciurognathi Rodentia Glires Euarchontoglires Eutheria Theria Mammalia Amniota Tetrapoda Sarcopterygii Euteleostomi Teleostomi Gnathostomata Vertebrata Craniata Chordata Deuterostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TTCACAAAGCCCATACACTTTCAC miRNA* AAAGTGCACGTGCTTTGGGACA mismatches: 4 bulges: 2 |
pre-miRNA
AGATGCCTTGCTCCTACAAGAGTAAAGTGCACGTGCTTTGGGACAGTGAGGAAAATAATGTTCACAAAGCCCATACACTTTCACCCTTTAGGAGAGTTG
dot-bracket secondary structure
..........((((((.(((.((((((((...(.(((((((((((.............))))).)))))).)...)))))).)).))))))))).....
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
evidence: cloned, SOLiD
references
[1] Linsen SE, de Wit E, de Bruijn E, Cuppen E, BMC Genomics. 11:249(2010)., "Small RNA expression and strain specificity in the rat"
[2] Kim J, Krichevsky A, Grad Y, Hayes GD, Kosik KS, Church GM, Ruvkun G, Proc Natl Acad Sci U S A. 101:360-365(2004)., "Identification of many microRNAs that copurify with polyribosomes in mammalian neurons"
AGATGCCTTGCTCCTACAAGAGTAAAGTGCACGTGCTTTGGGACAGTGAGGAAAATAATGTTCACAAAGCCCATACACTTTCACCCTTTAGGAGAGTTG
dot-bracket secondary structure
..........((((((.(((.((((((((...(.(((((((((((.............))))).)))))).)...)))))).)).))))))))).....
SIMILARITIES| miRBase mmu-mir-350: 1e-46 PMRD no hits microPC no hits | UniProt no hits RFAM mir-350: 8e-39 |
MOREmiRNEST target predictions: none
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
evidence: cloned, SOLiD
references
[1] Linsen SE, de Wit E, de Bruijn E, Cuppen E, BMC Genomics. 11:249(2010)., "Small RNA expression and strain specificity in the rat"
[2] Kim J, Krichevsky A, Grad Y, Hayes GD, Kosik KS, Church GM, Ruvkun G, Proc Natl Acad Sci U S A. 101:360-365(2004)., "Identification of many microRNAs that copurify with polyribosomes in mammalian neurons"
