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ABOUT THIS RECORD

ID: MNEST032902
species: Rattus norvegicus
miRNA family: mir-154
source: miRBase, original name: rno-mir-409 (MI0003550)

Taxonomy by NCBI:
Rattus norvegicus Rattus Murinae Muridae Muroidea Sciurognathi Rodentia Glires Euarchontoglires Eutheria Theria Mammalia Amniota Tetrapoda Sarcopterygii Euteleostomi Teleostomi Gnathostomata Vertebrata Craniata Chordata Deuterostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
AGGTTACCCGAGCAACTTTGCAT

miRNA*
GACGAATGTTGCTCGGTGAACCCCT

mismatches: 5
bulges: 2

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pre-miRNA
GGTACTCGGAGAGAGGTTACCCGAGCAACTTTGCATCTGGAGGACGAATGTTGCTCGGTGAACCCCTTTTCGGTATC

dot-bracket secondary structure
(((((.(((((((.((((..((((((((((((((........).)))).)))))))))..)))).))))))))))))


SIMILARITIES
miRBase mmu-mir-409: 2e-38

PMRD no hits

microPC no hits
UniProt no hits

RFAM mir-154: 5e-30

Identical with: mmu-mir-409 from miRBase (MNEST032059)

MORE

miRNEST target predictions: none
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
evidence: SOLiD

references

[1] Linsen SE, de Wit E, de Bruijn E, Cuppen E, BMC Genomics. 11:249(2010)., "Small RNA expression and strain specificity in the rat"
[2] Sewer A, Paul N, Landgraf P, Aravin A, Pfeffer S, Brownstein MJ, Tuschl T, van Nimwegen E, Zavolan M, BMC Bioinformatics. 6:267(2005)., "Identification of clustered microRNAs using an ab initio prediction method"




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