ABOUT THIS RECORDspecies: Rattus norvegicus
miRNA family: mir-8
source: miRBase, original name: rno-mir-429 (MI0001643)
Taxonomy by NCBI:
Rattus norvegicus Rattus Murinae Muridae Muroidea Sciurognathi Rodentia Glires Euarchontoglires Eutheria Theria Mammalia Amniota Tetrapoda Sarcopterygii Euteleostomi Teleostomi Gnathostomata Vertebrata Craniata Chordata Deuterostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TAATACTGTCTGGTAATGCCGT miRNA* GTCTTACCAGACATGGTTAGA mismatches: 3 bulges: 1 |
pre-miRNA
TGCCTGCTGATGGATGTCTTACCAGACATGGTTAGATCTGGATGTATCTGTCTAATACTGTCTGGTAATGCCGTCCATCCATGGC
dot-bracket secondary structure
.(((....((((((((.(((((((((((..(((((((..(((....))))))))))..)))))))))).).))))))))...)))
SIMILARITIES
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miRNEST target predictions: none
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
evidence: cloned, Northern
references
[1] Xie X, Lu J, Kulbokas EJ, Golub TR, Mootha V, Lindblad-Toh K, Lander ES, Kellis M, Nature. 434:338-345(2005)., "Systematic discovery of regulatory motifs in human promoters and 3' UTRs by comparison of several mammals"
[2] Watanabe T, Takeda A, Tsukiyama T, Mise K, Okuno T, Sasaki H, Minami N, Imai H, Genes Dev. 20:1732-1743(2006)., "Identification and characterization of two novel classes of small RNAs in the mouse germline: retrotransposon-derived siRNAs in oocytes and germline small RNAs in testes"
TGCCTGCTGATGGATGTCTTACCAGACATGGTTAGATCTGGATGTATCTGTCTAATACTGTCTGGTAATGCCGTCCATCCATGGC
dot-bracket secondary structure
.(((....((((((((.(((((((((((..(((((((..(((....))))))))))..)))))))))).).))))))))...)))
SIMILARITIES| miRBase mmu-mir-429: 4e-37 PMRD no hits microPC no hits | UniProt no hits RFAM no hits |
MOREmiRNEST target predictions: none
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
evidence: cloned, Northern
references
[1] Xie X, Lu J, Kulbokas EJ, Golub TR, Mootha V, Lindblad-Toh K, Lander ES, Kellis M, Nature. 434:338-345(2005)., "Systematic discovery of regulatory motifs in human promoters and 3' UTRs by comparison of several mammals"
[2] Watanabe T, Takeda A, Tsukiyama T, Mise K, Okuno T, Sasaki H, Minami N, Imai H, Genes Dev. 20:1732-1743(2006)., "Identification and characterization of two novel classes of small RNAs in the mouse germline: retrotransposon-derived siRNAs in oocytes and germline small RNAs in testes"
