ABOUT THIS RECORDspecies: Rattus norvegicus
miRNA family: mir-484
source: miRBase, original name: rno-mir-484 (MI0006151)
Taxonomy by NCBI:
Rattus norvegicus Rattus Murinae Muridae Muroidea Sciurognathi Rodentia Glires Euarchontoglires Eutheria Theria Mammalia Amniota Tetrapoda Sarcopterygii Euteleostomi Teleostomi Gnathostomata Vertebrata Craniata Chordata Deuterostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TCAGGCTCAGTCCCCTCCCGAT miRNA* AGGGAAGGGGGGGCGGGGCCTCGCGGCCCTGCTGCCTCGTC mismatches: 9 bulges: 19 |
pre-miRNA
GCATGCAGGGAAGGGGGGGCGGGGCCTCGCGGCCCTGCTGCCTCGTCAGGCTCAGTCCCCTCCCGATAAACCTCAAA
dot-bracket secondary structure
.......((((.(((((.((((((((....)))))))).((((....))))....))))))))).............
SIMILARITIES
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miRNEST target predictions: none
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
evidence: cloned, SOLiD
references
[1] Linsen SE, de Wit E, de Bruijn E, Cuppen E, BMC Genomics. 11:249(2010)., "Small RNA expression and strain specificity in the rat"
[2] Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S, Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V, Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B, Bissels U, Inman J, Phan Q, Chien M, Cell. 129:1401-1414(2007)., "A mammalian microRNA expression atlas based on small RNA library sequencing"
GCATGCAGGGAAGGGGGGGCGGGGCCTCGCGGCCCTGCTGCCTCGTCAGGCTCAGTCCCCTCCCGATAAACCTCAAA
dot-bracket secondary structure
.......((((.(((((.((((((((....)))))))).((((....))))....))))))))).............
SIMILARITIES| miRBase mmu-mir-484: 0.00000000000006 PMRD no hits microPC no hits | UniProt no hits RFAM mir-484: 0.000000000001 |
MOREmiRNEST target predictions: none
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
evidence: cloned, SOLiD
references
[1] Linsen SE, de Wit E, de Bruijn E, Cuppen E, BMC Genomics. 11:249(2010)., "Small RNA expression and strain specificity in the rat"
[2] Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S, Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V, Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B, Bissels U, Inman J, Phan Q, Chien M, Cell. 129:1401-1414(2007)., "A mammalian microRNA expression atlas based on small RNA library sequencing"
