ABOUT THIS RECORDspecies: Rattus norvegicus
miRNA family: mir-3556
source: miRBase, original name: rno-mir-3556b (MI0015414)
Taxonomy by NCBI:
Rattus norvegicus Rattus Murinae Muridae Muroidea Sciurognathi Rodentia Glires Euarchontoglires Eutheria Theria Mammalia Amniota Tetrapoda Sarcopterygii Euteleostomi Teleostomi Gnathostomata Vertebrata Craniata Chordata Deuterostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA ACCGATTTCAAATGGTGCTA miRNA* AACACCAGGAGAAATCGGTCA mismatches: 4 bulges: 1 |
pre-miRNA
GCTGGTGCTTTTCCCCCTACATCATAACCGATTTCAAATGGTGCTAGACAAAAACAGACTCTGAACACCAGGAGAAATCGGTCAGCCTGTGTAAGAGATG
GACCAGT
dot-bracket secondary structure
((((((.(.((((....(((((....(((((((((...(((((.((((...........))))..)))))...)))))))))......))))).)))).)
.))))))
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: SOLiD
references
[1] Linsen SE, de Wit E, de Bruijn E, Cuppen E, BMC Genomics. 11:249(2010)., "Small RNA expression and strain specificity in the rat"
GCTGGTGCTTTTCCCCCTACATCATAACCGATTTCAAATGGTGCTAGACAAAAACAGACTCTGAACACCAGGAGAAATCGGTCAGCCTGTGTAAGAGATG
GACCAGT
dot-bracket secondary structure
((((((.(.((((....(((((....(((((((((...(((((.((((...........))))..)))))...)))))))))......))))).)))).)
.))))))
SIMILARITIES| miRBase eca-mir-29c: 8e-45 PMRD no hits microPC no hits | UniProt no hits RFAM mir-29: 7e-18 |
Identical with: eca-mir-29c from miRBase (MNEST026973) |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: SOLiD
references
[1] Linsen SE, de Wit E, de Bruijn E, Cuppen E, BMC Genomics. 11:249(2010)., "Small RNA expression and strain specificity in the rat"
