ABOUT THIS RECORDspecies: Rattus norvegicus
miRNA family: miR-3561
source: miRBase, original name: rno-mir-3561 (MI0015423)
Taxonomy by NCBI:
Rattus norvegicus Rattus Murinae Muridae Muroidea Sciurognathi Rodentia Glires Euarchontoglires Eutheria Theria Mammalia Amniota Tetrapoda Sarcopterygii Euteleostomi Teleostomi Gnathostomata Vertebrata Craniata Chordata Deuterostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA ACTGTGTCAATCCAGGGTAGA miRNA* TATCCAGGGTAGACACTCAGA mismatches: 5 bulges: 0 |
pre-miRNA
AGGGCAGACACTCAGAACCTGAGACTGTGTCAATCCAGGGTAGACACTCAGAACCTGAGACTGTGTCTATCCAGGGTAGACACTCAGAACCTGAGGCAGC
ATATGTCCT
dot-bracket secondary structure
((((((....(((((...((((....(((((.((((.((((((((((((((...))))....)))))))))).)))).)))))))))...))))).....
...))))))
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: SOLiD
references
[1] Linsen SE, de Wit E, de Bruijn E, Cuppen E, BMC Genomics. 11:249(2010)., "Small RNA expression and strain specificity in the rat"
AGGGCAGACACTCAGAACCTGAGACTGTGTCAATCCAGGGTAGACACTCAGAACCTGAGACTGTGTCTATCCAGGGTAGACACTCAGAACCTGAGGCAGC
ATATGTCCT
dot-bracket secondary structure
((((((....(((((...((((....(((((.((((.((((((((((((((...))))....)))))))))).)))).)))))))))...))))).....
...))))))
SIMILARITIES| miRBase rno-mir-3561: 3e-57 PMRD no hits microPC no hits | UniProt no hits RFAM no hits |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: SOLiD
references
[1] Linsen SE, de Wit E, de Bruijn E, Cuppen E, BMC Genomics. 11:249(2010)., "Small RNA expression and strain specificity in the rat"
