ABOUT THIS RECORDspecies: Rattus norvegicus
source: miRBase, original name: rno-mir-3581 (MI0015454)
Taxonomy by NCBI:
Rattus norvegicus Rattus Murinae Muridae Muroidea Sciurognathi Rodentia Glires Euarchontoglires Eutheria Theria Mammalia Amniota Tetrapoda Sarcopterygii Euteleostomi Teleostomi Gnathostomata Vertebrata Craniata Chordata Deuterostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA AGGGGTTCACCGAGCAACATTCG miRNA* CAAAGTTGCTCGGGTAACCTCTCT mismatches: 3 bulges: 1 |
pre-miRNA
ATTGATACCGAAAAGGGGTTCACCGAGCAACATTCGTCCTCCAGATGCAAAGTTGCTCGGGTAACCTCTCTCCGAGTACCA
dot-bracket secondary structure
).((.(((((...(((((((..(((((((((.((((((.....)))).)).)))))))))..)))))))...)).))).))
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: SOLiD
references
[1] Linsen SE, de Wit E, de Bruijn E, Cuppen E, BMC Genomics. 11:249(2010)., "Small RNA expression and strain specificity in the rat"
ATTGATACCGAAAAGGGGTTCACCGAGCAACATTCGTCCTCCAGATGCAAAGTTGCTCGGGTAACCTCTCTCCGAGTACCA
dot-bracket secondary structure
).((.(((((...(((((((..(((((((((.((((((.....)))).)).)))))))))..)))))))...)).))).))
SIMILARITIES| miRBase mmu-mir-409: 1.0E-39 PMRD no hits microPC no hits | UniProt no hits RFAM 4mir-154: 6.0E-30 |
Identical with: mmu-mir-409 from miRBase (MNEST032059), rno-mir-409 from miRBase , mmu-mir-409 from miRBase |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: SOLiD
references
[1] Linsen SE, de Wit E, de Bruijn E, Cuppen E, BMC Genomics. 11:249(2010)., "Small RNA expression and strain specificity in the rat"
