ABOUT THIS RECORD

ID: MNEST033077
species: Rattus norvegicus
miRNA family: mir-133
source: miRBase, original name: rno-mir-3582 (MI0015456)

Taxonomy by NCBI:
Rattus norvegicus Rattus Murinae Muridae Muroidea Sciurognathi Rodentia Glires Euarchontoglires Eutheria Theria Mammalia Amniota Tetrapoda Sarcopterygii Euteleostomi Teleostomi Gnathostomata Vertebrata Craniata Chordata Deuterostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms






SEQUENCE & STRUCTURE

pre-miRNA
GCTGGCTGTCCTGTGGCAATCAATGCATAGCTACAGCTGGTTGAAGGGGACCAAATCCATTGAAGAGGCGATTTGGTTCCATTTTACCAGCTTTAGCAAA
GCATTGCCGCTGCTGGTT

dot-bracket secondary structure
((..((......((((((....((((...((((.(((((((.(((.((((((((((((.........).))))))))))).))).))))))).))))...
)))))))))).))..)).


SIMILARITIES

miRBase rno-mir-133a: 4e-44 PMRD no hits microPC no hits

UniProt no hits RFAM mir-133: 1e-28

Identical with: mmu-mir-133a-1 from miRBase (MNEST031859)

MORE

miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: SOLiD

references
[1] Linsen SE, de Wit E, de Bruijn E, Cuppen E, BMC Genomics. 11:249(2010)., "Small RNA expression and strain specificity in the rat"