ABOUT THIS RECORD

ID: MNEST033087
species: Rattus norvegicus
miRNA family: miR-125b
source: miRBase, original name: rno-mir-3588 (MI0015466)

Taxonomy by NCBI:
Rattus norvegicus Rattus Murinae Muridae Muroidea Sciurognathi Rodentia Glires Euarchontoglires Eutheria Theria Mammalia Amniota Tetrapoda Sarcopterygii Euteleostomi Teleostomi Gnathostomata Vertebrata Craniata Chordata Deuterostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms






SEQUENCE & STRUCTURE

pre-miRNA
CTGCTGGTACCTCTCCGCCTAGGTCCCAAGAGCCTGACTTGTGATGTTACTAAAATACCTCACAAGTTAGGGTCTCAGGGACTAGGAAAAGTCTGGTTTG
ATGCAG

dot-bracket secondary structure
((((....(((.((...(((((.((((.(((.((((((((((((.((.........)).)))))))))))).)))..)))))))))...))...)))...
..))))


SIMILARITIES

miRBase rno-mir-125b-2: 8e-45 PMRD no hits microPC no hits

UniProt no hits RFAM lin-4: 5e-28

Identical with: cfa-mir-125b-2 from miRBase (MNEST026691)

MORE

miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: SOLiD

references
[1] Linsen SE, de Wit E, de Bruijn E, Cuppen E, BMC Genomics. 11:249(2010)., "Small RNA expression and strain specificity in the rat"