ABOUT THIS RECORDspecies: Rattus norvegicus
miRNA family: mir-368
source: miRBase, original name: rno-mir-3595 (MI0015478)
Taxonomy by NCBI:
Rattus norvegicus Rattus Murinae Muridae Muroidea Sciurognathi Rodentia Glires Euarchontoglires Eutheria Theria Mammalia Amniota Tetrapoda Sarcopterygii Euteleostomi Teleostomi Gnathostomata Vertebrata Craniata Chordata Deuterostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA GTGGATTTTCCTCTACGAT miRNA* CATAGAAGGAGAATCTACCT mismatches: 2 bulges: 1 |
pre-miRNA
GGTGGTTTCCCAAGCAGCATTTGATACTGAAAACGTGGATTTTCCTCTACGATTAGTCATTAATATTGTACTCATAGAAGGAGAATCTACCTTTTAAATAT
CAAAGAACAACTCGATCCAG
dot-bracket secondary structure
).(((..((..........(((((((...((((.(((((((((((((((.((...((((.......)).)))).))).)))))))))))).))))...)))
)))).........)).))).
SIMILARITIES
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miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: SOLiD
references
[1] Linsen SE, de Wit E, de Bruijn E, Cuppen E, BMC Genomics. 11:249(2010)., "Small RNA expression and strain specificity in the rat"
GGTGGTTTCCCAAGCAGCATTTGATACTGAAAACGTGGATTTTCCTCTACGATTAGTCATTAATATTGTACTCATAGAAGGAGAATCTACCTTTTAAATAT
CAAAGAACAACTCGATCCAG
dot-bracket secondary structure
).(((..((..........(((((((...((((.(((((((((((((((.((...((((.......)).)))).))).)))))))))))).))))...)))
)))).........)).))).
SIMILARITIES| miRBase rno-mir-376a: 4.0E-41 PMRD no hits microPC no hits | UniProt no hits RFAM 4mir-154: 6.0E-28 |
Identical with: rno-mir-376a from miRBase (MNEST032889), mmu-mir-376a from miRBase |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: SOLiD
references
[1] Linsen SE, de Wit E, de Bruijn E, Cuppen E, BMC Genomics. 11:249(2010)., "Small RNA expression and strain specificity in the rat"
