ABOUT THIS RECORD

ID: MNEST033100
species: Rattus norvegicus
miRNA family: mir-3596
source: miRBase, original name: rno-mir-3596c (MI0015459)

Taxonomy by NCBI:
Rattus norvegicus Rattus Murinae Muridae Muroidea Sciurognathi Rodentia Glires Euarchontoglires Eutheria Theria Mammalia Amniota Tetrapoda Sarcopterygii Euteleostomi Teleostomi Gnathostomata Vertebrata Craniata Chordata Deuterostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms






SEQUENCE & STRUCTURE

pre-miRNA
CCCCTTCCAGTGCAGGGCGCAGCCTGGGGAAAGCTAGGAGGCCGTATAGTGATCTCCTCGGGTGTCTTCCTCAACTATACAACCTCCTACCTCAGCCCGG
GGGGCGCGGCAGGTGGG

dot-bracket secondary structure
.(((..((..(((...((((..((((((...((.(((((((..(((((((((.......(((.....))))).)))))))..))))))).))...)))))
)..)))).))))).)))


SIMILARITIES

miRBase mmu-let-7e: 1e-47 PMRD no hits microPC no hits

UniProt no hits RFAM let-7: 1e-34

Identical with: mmu-let-7e from miRBase (MNEST031758)

MORE

miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: SOLiD

references
[1] Linsen SE, de Wit E, de Bruijn E, Cuppen E, BMC Genomics. 11:249(2010)., "Small RNA expression and strain specificity in the rat"